Did you click on "select mods/components" before starting the installation? Important to do that and resolve conflicts. Also, unless you are testing, it's not recommended to use the "Tactical" pre-selection. Better to start from Minimal or Recommended and then choose the specific tactical mods/components you want to add. Also, to save yourself future headaches, once you have a custom selection you like, click Options -> Export on the selection tab to save your selection as an ini file that you can import later if you need to re-install.
BWP_Fixpack_Originals wouldn't be created by BWS. That's only for creating patches (i.e., for modders), not for applying them (i.e., what BWS does). The patches for Bonehill, RoT and SoS had incorrect paths in them, which was causing this problem. I've corrected them in the Fixpack now. What is the problem with the TDD patch?
The lines in the log about components "not selected to be installed" are harmless but I've updated BWS to suppress them now also.